IQ (Institute for Quantitative Health Science and Engineering) at MSU

  Chris Contag is the founding director of the Institute for Quantitative Health Science and Engineering and the chairperson of the new Department of Biomedical Engineering in the College of Engineering. Contag was previously a professor in the Departments of Pediatrics, Radiology, Bioengineering and Microbiology and Immunology at Stanford University. He held the titles of …

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Humanities Commons and the Cultivation of Sustainable Communities

As we navigate the intense period of transformation in human communication through which we are living, identifying ways to nurture sustainable communities through which scholarship can be shared, discovered, and enhanced gains urgency. So many of the platforms through which we might cultivate scholarly lives together — Facebook, Twitter, Google, Academia.edu — are compromised by business models designed to maximize …

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On developing my dissertation

“What are you researching?” Since starting my PhD program at MSU this fall, I have been asked this question countless times, but it is one to which I have no definite answer yet. Some grad students start their studies by joining an ongoing project, while others begin from scratch and create their own project. I fall …

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Ex Laboratorium

The E. coli long-term evolution experiment, or LTEE for short, is approaching its 30th birthday, which will be on February 24th, 2018. In honor of all the people who have worked on this project, I thought it would be neat to commission a special, but shareable, piece of art. Given the history of science and …

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From the Beginning

It was five years ago today I transferred my meanderings since the mid 90s into this blog. 246 blog entries preceded this one with another dozen or so that never got past the draft stage. Probably many of the 246 should have stayed as drafts. So the occasion caused me to go back and look …

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DOJ invokes Title VI against Harvard admissions

“Elections have consequences…” — Barack Obama See 20 years @15 percent: does Harvard discriminate against Asian-Americans? CNN: The Justice Department is actively investigating Harvard University’s use of race in its admissions policies and has concluded the school is “out of compliance” with federal law, according to documents obtained by CNN. … [Click through for DOJ …

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A Sinkhole That Is Pulling Us All Down

While most local papers probably did not splash the news on their front page or headline their evening news last week, our largely bought Congress just gave the Military-Industrial-Complex (MIC) a sizable raise in thanks for their contributions and lobbying pursuits. President Trump’s initial budget request for the Pentagon was for a sizable $54 billion increase for the military …

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Behold, the Super Cow

Hmm… how do they compute the Net Merit and GTPI? (But, but, what about all of that missing heritability?) See also Applied genomics: the genetic “super cow” Genomic prediction: no bull. Attention climate virtue signalers: more efficient cows produce less methane per liter of milk! Drink milk from genetically engineered cows :-) Tweet

23andme

I’m in Mountain View to give a talk at 23andMe. Their latest funding round was $250M on a (reported) valuation of $1.5B. If I just add up the Crunchbase numbers it looks like almost half a billion invested at this point… Slides: Genomic Prediction of Complex Traits Abstract: We apply methods from Compressed Sensing (L1-penalized regression; Donoho-Tanner …

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Thread Safety

As I noted in yesterday’s post, one of the major changes associated with the new “generic” callback structure in CPLEX is that users now bear the responsibility of making their callbacks thread-safe. As I also noted yesterday, this is pretty new stuff for me. So I’m going to try to share what I know about thread …

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CPLEX 12.8: Generic Callbacks

IBM is getting ready to release CPLEX 12.8, and I had the opportunity to attend a presentation about by Xavier Nodet at the 2017 INFORMS annual meeting. Here are links to two presentations by Xavier: CPLEX Optimization Studio 12.8 – What’s New and CPLEX 12.8 – the Generic Callback. As with any new release, there …

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