Adventures in the high dimensional space of genomes

Written by: Stephen Hsu

Primary Source: Information Processing

2000+ views in 4 months is not bad considering that this is a genomics paper but uses terms like phase transition, sparsity, L1-penalized regression, Gaussian random matrices, etc. I wish I knew how many views the arXiv and BioMed Central versions of the paper have received. Related posts.

Dear Dr Hsu,

We thought you might be interested to know how many people have read your article:

Applying compressed sensing to genome-wide association studies
Shashaank Vattikuti, James J Lee, Christopher C Chang, Stephen D H Hsu and Carson C Chow
GigaScience, 3:10 (16 Jun 2014)
http://www.gigasciencejournal.com/content/3/1/10

Total accesses to this article since publication: 2266

This figure includes accesses to the full text, abstract and PDF of the article on the GigaScience website. It does not include accesses from PubMed Central or other archive sites (see http://www.biomedcentral.com/about/archive). The total access statistics for your article are therefore likely to be significantly higher. …

My guess is still that it will take some time before these methods become widely understood in genomics.

Crossing boundaries: … In a similar way Turing found a home in Cambridge mathematical culture, yet did not belong entirely to it. The division between ‘pure’ and ‘applied’ mathematics was at Cambridge then as now very strong, but Turing ignored it, and he never showed mathematical parochialism. If anything, it was the attitude of a Russell that he acquired, assuming that mastery of so difficult a subject granted the right to invade others.

PS I will be at the ASHG meeting in San Diego later this month along with (I think) all of the other authors of the paper. Vattikuti will be giving a poster session.

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Stephen Hsu
Stephen Hsu is vice president for Research and Graduate Studies at Michigan State University. He also serves as scientific adviser to BGI (formerly Beijing Genomics Institute) and as a member of its Cognitive Genomics Lab. Hsu’s primary work has been in applications of quantum field theory, particularly to problems in quantum chromodynamics, dark energy, black holes, entropy bounds, and particle physics beyond the standard model. He has also made contributions to genomics and bioinformatics, the theory of modern finance, and in encryption and information security. Founder of two Silicon Valley companies—SafeWeb, a pioneer in SSL VPN (Secure Sockets Layer Virtual Private Networks) appliances, which was acquired by Symantec in 2003, and Robot Genius Inc., which developed anti-malware technologies—Hsu has given invited research seminars and colloquia at leading research universities and laboratories around the world.
Stephen Hsu

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